Hi
OK...
Lets begin with general speeds and limitations:
As in real-life...every home-built is different than other...depending on its owner's/builder's approach and specifications selected when built (engine selection, propeller selection, materials used, overall weight...canards selection etc...).
So...comparing the VSKYLABS LongEZ, which was built as a 'home-built' project, but to follow the design specs of the NR79RA prototype, with another one, may show a few differences in performance and handling.
Now for some practical aspects:
First, check on your weight (payload and fuel) settings. You will find out that depending on that, with an aircraft flying a single pilot and 25%-50% fuel load, the stated docile flying handling at airspeeds of around 55 knots is possible without special issues. Give it a try, it will affect the landing handling dramatically, and you will be able to flare at 55 knots easily.
The original user manual for the LongEZ is introducing the design values which were used for the VSKYLABS LongEZ. Rotation speed is 50-60 knots (depending on CG), while liftoff should be executed around 65-70 knots. The VSKYLABS LongEZ is following these specs with reasonable margins.
Landing, according to the original manual should be carried with pattern speed of 70-75 knots, slowing to 65 knots on final. Touching down at 55-50 knots is straight forward, but again, depending on your fuel and weight configuration.
As for the values in Plane maker:
Please note that these (stall speeds etc...) are not affecting the flight dynamics model and will not determine whenever the plane will stall. It is for reference only. Try it yourself; set the plane with different weight and fuel loading configuration and see that you can skim along at ~52 knots without stalling.
I am familiar with the vezePilot LongEZ (there is also a link to his website and project, in the VSKYLABS LongEZ page, along with a recommendation of being a very interesting resource of freeware, good quality models for X-Plane - look for it at the bottom of the VSKYLABS project page:
www.vskylabs.com/2018/04/vskylabs-rutan-longez-project.html?m=1 ).
So, in general, these two LongEZ (VSKYLABS, vezePilot) are representing the same aircraft but with slightly different configurations (engine, props and other aspects). My approach on this is like as it is in real life...two different home-builts of the same plane, which were built with different specs, will show some differences. Although not too much of a difference as it is a LongEZ after all..
Regarding the botched landing
...try to start these landing trials with a light aircraft configuration (25% fuel, low payload), and gradually learn how it behaves.
It is important to say that the project is under constant development, and seeking for the most accurate flight dynamics and handling characteristics is an ongoing, continuous effort. Every user feedback and inputs are taken into account, being analyzed and if needed, they are implemented.
Here is a short video of some landing-tests runs which were made a while ago...trying (with success) to land with the nose wheel retracted...holding it up while being extracted, all together in the ~60 knots speed range. This was done with latest version v1.4 at ~60 knots, 50% fuel.
(video is a bit of a low quality...)